WEB-based GEne SeT AnaLysis Toolkit
 
Translating gene lists into biological insights...
 


User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID. The second row lists the following statistics:
Finally, genes in the gene set are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:Transcription Target       Name:hsa_CTTTGT_V$LEF1_Q2       ID:DB_ID:2428
C=1939; O=10; E=1.80; R=5.56; rawP=8.10e-06; adjP=0.0011
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000160094 NA ZNF362 zinc finger protein 362 149076 ENSG00000160094
2  ENSG00000162714 NA ZNF496 zinc finger protein 496 84838 ENSG00000162714
3  ENSG00000100982 NA PCIF1 PDX1 C-terminal inhibiting factor 1 63935 ENSG00000100982
4  ENSG00000076108 NA BAZ2A bromodomain adjacent to zinc finger domain, 2A 11176 ENSG00000076108
5  ENSG00000198728 NA LDB1 LIM domain binding 1 8861 ENSG00000198728
6  ENSG00000092199 NA HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 3183 ENSG00000092199
7  ENSG00000108175 NA ZMIZ1 zinc finger, MIZ-type containing 1 57178 ENSG00000108175
8  ENSG00000139613 NA SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 6601 ENSG00000139613
9  ENSG00000146083 NA RNF44 ring finger protein 44 22838 ENSG00000146083
10  ENSG00000156030 NA C14orf43 chromosome 14 open reading frame 43 91748 ENSG00000156030


Database:Transcription Target       Name:hsa_GGGCGGR_V$SP1_Q6       ID:DB_ID:2452
C=2891; O=11; E=2.68; R=4.10; rawP=4.52e-05; adjP=0.0026
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000136715 NA SAP130 Sin3A-associated protein, 130kDa 79595 ENSG00000136715
2  ENSG00000160094 NA ZNF362 zinc finger protein 362 149076 ENSG00000160094
3  ENSG00000162714 NA ZNF496 zinc finger protein 496 84838 ENSG00000162714
4  ENSG00000100982 NA PCIF1 PDX1 C-terminal inhibiting factor 1 63935 ENSG00000100982
5  ENSG00000076108 NA BAZ2A bromodomain adjacent to zinc finger domain, 2A 11176 ENSG00000076108
6  ENSG00000198728 NA LDB1 LIM domain binding 1 8861 ENSG00000198728
7  ENSG00000107331 NA ABCA2 ATP-binding cassette, sub-family A (ABC1), member 2 20 ENSG00000107331
8  ENSG00000184634 NA MED12 mediator complex subunit 12 9968 ENSG00000184634
9  ENSG00000168763 NA CNNM3 cyclin M3 26505 ENSG00000168763
10  ENSG00000146083 NA RNF44 ring finger protein 44 22838 ENSG00000146083
11  ENSG00000099995 NA SF3A1 splicing factor 3a, subunit 1, 120kDa 10291 ENSG00000099995


Database:Transcription Target       Name:hsa_MGGAAGTG_V$GABP_B       ID:DB_ID:2418
C=744; O=6; E=0.69; R=8.69; rawP=6.02e-05; adjP=0.0026
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000143183 NA TMCO1 transmembrane and coiled-coil domains 1 54499 ENSG00000143183
2  ENSG00000198198 NA SZT2 seizure threshold 2 homolog (mouse) 23334 ENSG00000198198
3  ENSG00000146083 NA RNF44 ring finger protein 44 22838 ENSG00000146083
4  ENSG00000085872 NA CHERP calcium homeostasis endoplasmic reticulum protein 10523 ENSG00000085872
5  ENSG00000099995 NA SF3A1 splicing factor 3a, subunit 1, 120kDa 10291 ENSG00000099995
6  ENSG00000156030 NA C14orf43 chromosome 14 open reading frame 43 91748 ENSG00000156030


Database:Transcription Target       Name:hsa_V$ARP1_01       ID:DB_ID:1954
C=165; O=3; E=0.15; R=19.60; rawP=0.0005; adjP=0.0086
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000198198 NA SZT2 seizure threshold 2 homolog (mouse) 23334 ENSG00000198198
2  ENSG00000139613 NA SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 6601 ENSG00000139613
3  ENSG00000156030 NA C14orf43 chromosome 14 open reading frame 43 91748 ENSG00000156030


Database:Transcription Target       Name:hsa_V$ATF4_Q2       ID:DB_ID:2157
C=256; O=3; E=0.24; R=12.63; rawP=0.0017; adjP=0.0086
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000146083 NA RNF44 ring finger protein 44 22838 ENSG00000146083
2  ENSG00000076108 NA BAZ2A bromodomain adjacent to zinc finger domain, 2A 11176 ENSG00000076108
3  ENSG00000107331 NA ABCA2 ATP-binding cassette, sub-family A (ABC1), member 2 20 ENSG00000107331


Database:Transcription Target       Name:hsa_V$AP2GAMMA_01       ID:DB_ID:2124
C=246; O=3; E=0.23; R=13.15; rawP=0.0015; adjP=0.0086
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000160094 NA ZNF362 zinc finger protein 362 149076 ENSG00000160094
2  ENSG00000100982 NA PCIF1 PDX1 C-terminal inhibiting factor 1 63935 ENSG00000100982
3  ENSG00000198728 NA LDB1 LIM domain binding 1 8861 ENSG00000198728


Database:Transcription Target       Name:hsa_V$AP1_Q6       ID:DB_ID:1965
C=253; O=3; E=0.23; R=12.78; rawP=0.0017; adjP=0.0086
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000170322 NA NFRKB nuclear factor related to kappaB binding protein 4798 ENSG00000170322
2  ENSG00000076108 NA BAZ2A bromodomain adjacent to zinc finger domain, 2A 11176 ENSG00000076108
3  ENSG00000107331 NA ABCA2 ATP-binding cassette, sub-family A (ABC1), member 2 20 ENSG00000107331


Database:Transcription Target       Name:hsa_V$FREAC2_01       ID:DB_ID:2044
C=255; O=3; E=0.24; R=12.68; rawP=0.0017; adjP=0.0086
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000160094 NA ZNF362 zinc finger protein 362 149076 ENSG00000160094
2  ENSG00000170322 NA NFRKB nuclear factor related to kappaB binding protein 4798 ENSG00000170322
3  ENSG00000198198 NA SZT2 seizure threshold 2 homolog (mouse) 23334 ENSG00000198198


Database:Transcription Target       Name:hsa_SCGGAAGY_V$ELK1_02       ID:DB_ID:2413
C=1176; O=6; E=1.09; R=5.50; rawP=0.0007; adjP=0.0086
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000136715 NA SAP130 Sin3A-associated protein, 130kDa 79595 ENSG00000136715
2  ENSG00000143183 NA TMCO1 transmembrane and coiled-coil domains 1 54499 ENSG00000143183
3  ENSG00000198198 NA SZT2 seizure threshold 2 homolog (mouse) 23334 ENSG00000198198
4  ENSG00000103197 NA TSC2 tuberous sclerosis 2 7249 ENSG00000103197
5  ENSG00000085872 NA CHERP calcium homeostasis endoplasmic reticulum protein 10523 ENSG00000085872
6  ENSG00000099995 NA SF3A1 splicing factor 3a, subunit 1, 120kDa 10291 ENSG00000099995


Database:Transcription Target       Name:hsa_V$NRF2_01       ID:DB_ID:1915
C=265; O=3; E=0.25; R=12.21; rawP=0.0019; adjP=0.0086
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000143183 NA TMCO1 transmembrane and coiled-coil domains 1 54499 ENSG00000143183
2  ENSG00000198198 NA SZT2 seizure threshold 2 homolog (mouse) 23334 ENSG00000198198
3  ENSG00000085872 NA CHERP calcium homeostasis endoplasmic reticulum protein 10523 ENSG00000085872




WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).